I'm still having this problem. When i log in my resources are reset to 9300/17400. I also got about 14400 gold and it says i'm having to give away gold. I have the 90 pop limit and the resource storage upgrade. Elven race/alpine.
client says its v1.3.3 and patch notes for v1.3.2 said it was fixed. Either it didn't get fixed or change got reverted.